Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 2651 to 2675 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
1824508
1824521
AAAATG
13
-
2
TCATTT
AT1G06020
1824250
1826163
+
Genic
258
NC_003070.9
1826100
1826112
AAAATC
12
-
2
ATTTTG
AT1G06020
1824250
1826163
+
Genic
1850
NC_003070.9
1827734
1827747
ATC
13
+
4
TCA
AT1G06030
1826803
1828279
+
Genic
931
NC_003070.9
1828218
1828230
A
12
-
12
T
AT1G06030
1826803
1828279
+
Genic
1415
NC_003070.9
1828245
1828258
AAAAAG
13
-
2
TTTTCT
AT1G06030
1826803
1828279
+
Genic
1442
NC_003070.9
1828692
1828708
ATC
16
+
5
TCA
STO
1828340
1829983
-
Exon
1275
NC_003070.9
1832105
1832117
ACAGAG
12
+
2
ACAGAG
AT1G06050
1830471
1832555
-
Genic
438
NC_003070.9
1832556
1832568
AAGTCC
12
+
2
GTCCAA
AT1G06050
1830471
1832555
-
Intergenic
-1
NC_003070.9
1832593
1832606
AAAAAT
13
+
2
AAAATA
AT1G06050
1830471
1832555
-
Intergenic
-38
NC_003070.9
1832803
1832821
AAAAAG
18
+
3
AGAAAA
AT1G06060
1832941
1834861
+
Intergenic
-120
NC_003070.9
1834189
1834201
AAAAAT
12
-
2
TTTTTA
AT1G06060
1832941
1834861
+
Genic
1248
NC_003070.9
1834688
1834709
AAACC
21
-
4
TTGGT
AT1G06060
1832941
1834861
+
Genic
1747
NC_003070.9
1834915
1834928
AATATG
13
+
2
GAATAT
AT1G06070
1834829
1837758
-
Genic
2830
NC_003070.9
1835366
1835383
AGC
17
-
5
TGC
AT1G06070
1834829
1837758
-
Genic
2375
NC_003070.9
1835402
1835416
AAC
14
-
4
TGT
AT1G06070
1834829
1837758
-
Genic
2342
NC_003070.9
1837560
1837591
AAG
31
+
10
GAA
AT1G06070
1834829
1837758
-
Genic
167
NC_003070.9
1838083
1838096
AAATAC
13
-
2
TATTTG
AT1G06070
1834829
1837758
-
Intergenic
-325
NC_003070.9
1838317
1838330
AATTC
13
+
2
TTCAA
AT1G06070
1834829
1837758
-
Intergenic
-559
NC_003070.9
1839865
1839877
AAAAT
12
-
2
TTATT
AT1G04443
1839483
1839729
-
Intergenic
-136
NC_003070.9
1840406
1840418
AAACAT
12
+
2
CATAAA
AT1G04443
1839483
1839729
-
Intergenic
-677
NC_003070.9
1840781
1840797
AAAAAG
16
+
2
AAAAAG
AT1G04443
1839483
1839729
-
Intergenic
-1052
NC_003070.9
1841557
1841575
AT
18
+
9
AT
AT1G04443
1839483
1839729
-
Intergenic
-1828
NC_003070.9
1841570
1841585
ACATAT
15
-
2
TATATG
AT1G04443
1839483
1839729
-
Intergenic
-1841
NC_003070.9
1841578
1841593
ACAT
15
-
3
TATG
AT1G04443
1839483
1839729
-
Intergenic
-1849
NC_003070.9
1841684
1841700
AAT
16
+
5
AAT
ADS1
1843463
1846311
+
Intergenic
-1763