Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4701 to 4725 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
3378002
3378014
AACAAG
12
-
2
CTTGTT
AT1G10300
3377878
3380414
+
Genic
124
NC_003070.9
3379671
3379683
AAGGAG
12
+
2
GAGAAG
AT1G10300
3377878
3380414
+
Genic
1793
NC_003070.9
3379930
3379944
ACATCC
14
-
2
TGGATG
AT1G10300
3377878
3380414
+
Genic
2052
NC_003070.9
3379962
3379975
AAG
13
+
4
AAG
AT1G10300
3377878
3380414
+
Genic
2084
NC_003070.9
3380004
3380019
AAGATC
15
+
2
TCAAGA
AT1G10300
3377878
3380414
+
Genic
2126
NC_003070.9
3380439
3380451
AAATCC
12
-
2
TTTGGA
AT1G10300
3377878
3380414
+
Intergenic
2561
NC_003070.9
3380616
3380632
A
16
-
16
T
AT1G10300
3377878
3380414
+
Intergenic
2738
NC_003070.9
3380895
3380907
AATT
12
+
3
TTAA
AT1G10300
3377878
3380414
+
Intergenic
3017
NC_003070.9
3380901
3380914
AAAATT
13
+
2
AATTAA
AT1G10300
3377878
3380414
+
Intergenic
3023
NC_003070.9
3381178
3381190
AACT
12
-
3
GTTA
AT1G10310
3381447
3384003
-
Intergenic
2813
NC_003070.9
3381256
3381268
AAATAT
12
+
2
TAAATA
AT1G10310
3381447
3384003
-
Intergenic
2735
NC_003070.9
3383015
3383027
AAATG
12
+
2
AAATG
AT1G10310
3381447
3384003
-
Genic
976
NC_003070.9
3383865
3383877
ACGATG
12
-
2
CATCGT
AT1G10310
3381447
3384003
-
Genic
126
NC_003070.9
3383888
3383900
AAAGAG
12
-
2
TTCTCT
AT1G10310
3381447
3384003
-
Genic
103
NC_003070.9
3384358
3384371
ACAGAG
13
-
2
TCTCTG
AT1G10320
3384118
3388376
-
Genic
4005
NC_003070.9
3386318
3386330
AAGAGG
12
+
2
GAGGAA
AT1G10320
3384118
3388376
-
Genic
2046
NC_003070.9
3386483
3386496
AAAGAG
13
+
2
AAAGAG
AT1G10320
3384118
3388376
-
Genic
1880
NC_003070.9
3386666
3386678
AACAG
12
-
2
CTGTT
AT1G10320
3384118
3388376
-
Genic
1698
NC_003070.9
3387109
3387126
AAAAC
17
+
3
CAAAA
AT1G10320
3384118
3388376
-
Genic
1250
NC_003070.9
3387831
3387844
AATATG
13
-
2
ATATTC
AT1G10320
3384118
3388376
-
Genic
532
NC_003070.9
3387845
3387859
AGGATG
14
-
2
CATCCT
AT1G10320
3384118
3388376
-
Genic
517
NC_003070.9
3388007
3388020
AAGAGG
13
-
2
CTCTTC
AT1G10320
3384118
3388376
-
Genic
356
NC_003070.9
3388027
3388040
AAGAGG
13
-
2
CTTCCT
AT1G10320
3384118
3388376
-
Genic
336
NC_003070.9
3390205
3390222
AACAG
17
-
3
TCTGT
AT1G10330
3388599
3390150
+
Intergenic
1606
NC_003070.9
3390423
3390435
ACACAT
12
+
2
TACACA
AT1G10340
3390322
3392633
-
Genic
2198