Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5176 to 5200 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
3730421
3730435
AAG
14
+
4
AAG
AT1G11145
3727532
3728166
-
Intergenic
-2255
NC_003070.9
3732089
3732101
AATAC
12
+
2
AATAC
AT1G11160
3733044
3739844
+
Intergenic
-943
NC_003070.9
3732694
3732706
AAAAAG
12
-
2
TTTTTC
AT1G11160
3733044
3739844
+
Intergenic
-338
NC_003070.9
3732737
3732749
A
12
-
12
T
AT1G11160
3733044
3739844
+
Intergenic
-295
NC_003070.9
3732802
3732814
AAAAC
12
+
2
AAAAC
AT1G11160
3733044
3739844
+
Intergenic
-230
NC_003070.9
3732855
3732869
AAATAT
14
-
2
TATATT
AT1G11160
3733044
3739844
+
Intergenic
-175
NC_003070.9
3732999
3733013
AAAAT
14
+
2
AAAAT
AT1G11160
3733044
3739844
+
Intergenic
-31
NC_003070.9
3734127
3734140
AAAAT
13
-
2
TATTT
AT1G11160
3733044
3739844
+
Genic
1083
NC_003070.9
3734406
3734418
AAGAGC
12
-
2
CTCTTG
AT1G11160
3733044
3739844
+
Genic
1362
NC_003070.9
3735504
3735516
AATGTG
12
+
2
GAATGT
AT1G11160
3733044
3739844
+
Genic
2460
NC_003070.9
3735532
3735544
AAACTT
12
+
2
AAACTT
AT1G11160
3733044
3739844
+
Genic
2488
NC_003070.9
3736399
3736412
ACTATC
13
-
2
GATAGT
AT1G11160
3733044
3739844
+
Genic
3355
NC_003070.9
3737403
3737415
AAACAG
12
-
2
CTGTTT
AT1G11160
3733044
3739844
+
Genic
4359
NC_003070.9
3740415
3740428
A
13
-
13
T
AT1G11170
3740664
3744675
+
Intergenic
-236
NC_003070.9
3740613
3740628
AAAAT
15
-
3
ATTTT
AT1G11170
3740664
3744675
+
Intergenic
-36
NC_003070.9
3740675
3740689
AAACG
14
-
2
GTTTC
AT1G11170
3740664
3744675
+
Genic
11
NC_003070.9
3740803
3740817
AAAGAG
14
-
2
TTTCTC
AT1G11170
3740664
3744675
+
Genic
139
NC_003070.9
3740825
3740838
AAGAC
13
-
2
TCTTG
AT1G11170
3740664
3744675
+
Genic
161
NC_003070.9
3742792
3742804
ATATGC
12
+
2
ATGCAT
AT1G11170
3740664
3744675
+
Genic
2128
NC_003070.9
3744385
3744399
ACT
14
-
4
GTA
AT1G11170
3740664
3744675
+
Genic
3721
NC_003070.9
3744437
3744450
AAC
13
+
4
AAC
AT1G11170
3740664
3744675
+
Genic
3773
NC_003070.9
3744672
3744684
AAGAAT
12
-
2
CTTATT
AT1G11170
3740664
3744675
+
Genic
4008
NC_003070.9
3744693
3744712
AAAAAC
19
+
3
ACAAAA
AT1G11170
3740664
3744675
+
Intergenic
4029
NC_003070.9
3744768
3744780
AAAAAT
12
-
2
ATTTTT
AT1G11175
3744858
3745655
+
Intergenic
-78
NC_003070.9
3744791
3744803
AAAAAT
12
+
2
TAAAAA
AT1G11175
3744858
3745655
+
Intergenic
-55