Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5651 to 5675 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4045660
4045672
AATCTC
12
-
2
ATTGAG
RUB3
4045619
4045855
+
Exon
41
NC_003070.9
4045917
4045932
AAAG
15
-
3
TTTC
RUB3
4045619
4045855
+
Intergenic
298
NC_003070.9
4046883
4046895
AAAAG
12
+
2
AAAGA
AT1G11990
4046079
4049140
-
Genic
2245
NC_003070.9
4047027
4047039
AACAG
12
-
2
TTCTG
AT1G11990
4046079
4049140
-
Genic
2101
NC_003070.9
4047113
4047130
AAG
17
+
5
AGA
AT1G11990
4046079
4049140
-
Genic
2010
NC_003070.9
4048272
4048284
AAAATC
12
+
2
TCAAAA
AT1G11990
4046079
4049140
-
Genic
856
NC_003070.9
4049097
4049109
ACAGAG
12
-
2
TCTCTG
AT1G11990
4046079
4049140
-
Genic
31
NC_003070.9
4049124
4049138
AG
14
+
7
GA
AT1G11990
4046079
4049140
-
Genic
2
NC_003070.9
4049173
4049185
AAAGCG
12
+
2
GAAAGC
AT1G11990
4046079
4049140
-
Intergenic
-33
NC_003070.9
4049209
4049233
AG
24
+
12
GA
AT1G11990
4046079
4049140
-
Intergenic
-69
NC_003070.9
4050449
4050461
AAGGG
12
+
2
AAGGG
AT1G12000
4049896
4053871
-
Genic
3410
NC_003070.9
4052251
4052265
A
14
+
14
A
AT1G12000
4049896
4053871
-
Genic
1606
NC_003070.9
4053090
4053107
A
17
+
17
A
AT1G12000
4049896
4053871
-
Genic
764
NC_003070.9
4054100
4054112
AAACC
12
+
2
ACCAA
AT1G12000
4049896
4053871
-
Intergenic
-229
NC_003070.9
4054771
4054784
AAAAT
13
-
2
TTATT
AT1G12000
4049896
4053871
-
Intergenic
-900
NC_003070.9
4054961
4054973
AAGGCC
12
+
2
GGCCAA
AT1G12000
4049896
4053871
-
Intergenic
-1090
NC_003070.9
4055179
4055191
AAATT
12
-
2
TAATT
AT1G12010
4056165
4057968
+
Intergenic
-974
NC_003070.9
4055339
4055353
AAATTC
14
+
2
TCAAAT
AT1G12010
4056165
4057968
+
Intergenic
-812
NC_003070.9
4056257
4056274
AG
17
+
8
AG
AT1G12010
4056165
4057968
+
Genic
92
NC_003070.9
4056270
4056282
AGATGG
12
+
2
GAGATG
AT1G12010
4056165
4057968
+
Genic
105
NC_003070.9
4059480
4059492
AAAAAC
12
+
2
CAAAAA
AT1G12015
4058487
4058576
+
Intergenic
993
NC_003070.9
4060369
4060381
AAAAC
12
+
2
ACAAA
AT1G12020
4061363
4063549
-
Intergenic
3168
NC_003070.9
4061051
4061065
A
14
+
14
A
AT1G12020
4061363
4063549
-
Intergenic
2484
NC_003070.9
4061350
4061362
A
12
-
12
T
AT1G12020
4061363
4063549
-
Intergenic
2187
NC_003070.9
4061825
4061837
ACGGCG
12
+
2
GCGACG
AT1G12020
4061363
4063549
-
Genic
1712
