Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5601 to 5625 repeats of 170418
Go To:
<<
<
223
224
225
226
227
>
>>
Clear Filters
Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4003307
4003319
AACAG
12
-
2
TTCTG
AT1G11860
4001113
4003748
+
Genic
2194
NC_003070.9
4003523
4003537
AACAAG
14
+
2
GAACAA
AT1G11860
4001113
4003748
+
Genic
2410
NC_003070.9
4003533
4003548
AAGAGG
15
+
2
AAGAGG
AT1G11860
4001113
4003748
+
Genic
2420
NC_003070.9
4003848
4003864
ACG
16
-
5
TCG
SRS
4003757
4007015
+
Exon
91
NC_003070.9
4004248
4004260
AACAGG
12
+
2
CAGGAA
SRS
4003757
4007015
+
Exon
491
NC_003070.9
4007785
4007801
AAAAAG
16
+
2
AAAAGA
AT1G11880
4007705
4010461
-
Genic
2660
NC_003070.9
4008687
4008700
AACAAG
13
+
2
ACAAGA
AT1G11880
4007705
4010461
-
Genic
1761
NC_003070.9
4008856
4008868
ATATGC
12
+
2
ATGCAT
AT1G11880
4007705
4010461
-
Genic
1593
NC_003070.9
4009739
4009752
AAGTC
13
-
2
CTTGA
AT1G11880
4007705
4010461
-
Genic
709
NC_003070.9
4009802
4009814
AGAT
12
+
3
ATAG
AT1G11880
4007705
4010461
-
Genic
647
NC_003070.9
4010045
4010057
ACTCAT
12
+
2
CTCATA
AT1G11880
4007705
4010461
-
Genic
404
NC_003070.9
4010731
4010745
AAAAG
14
+
2
AAAAG
SEC22
4010757
4013104
+
Intergenic
-12
NC_003070.9
4014168
4014180
AGCTCC
12
+
2
CAGCTC
AT1G11900
4013121
4014688
-
Genic
508
NC_003070.9
4015268
4015322
AG
54
-
27
TC
AT1G11905
4014782
4016544
+
Genic
486
NC_003070.9
4023127
4023141
ACACTC
14
+
2
TCACAC
AT1G11915
4021750
4023292
+
Genic
1377
NC_003070.9
4023545
4023557
AACAGG
12
+
2
CAGGAA
AT1G11920
4023533
4025113
-
Genic
1556
NC_003070.9
4025264
4025276
AAATG
12
+
2
AATGA
AT1G11920
4023533
4025113
-
Intergenic
-151
NC_003070.9
4025464
4025476
AAGTCT
12
+
2
AGTCTA
AT1G11920
4023533
4025113
-
Intergenic
-351
NC_003070.9
4026147
4026159
AAAATT
12
+
2
AAATTA
AT1G11925
4025930
4026733
-
Genic
574
NC_003070.9
4026706
4026718
ACACAT
12
-
2
TGTATG
AT1G11925
4025930
4026733
-
Genic
15
NC_003070.9
4027288
4027300
AGGATC
12
-
2
TCCTGA
AT1G11925
4025930
4026733
-
Intergenic
-555
NC_003070.9
4027369
4027381
AACGT
12
+
2
AACGT
AT1G11925
4025930
4026733
-
Intergenic
-636
NC_003070.9
4027649
4027661
AATGTC
12
-
2
GACATT
AT1G11925
4025930
4026733
-
Intergenic
-916
NC_003070.9
4029762
4029774
AAAGTG
12
-
2
CACTTT
AT1G11930
4028595
4030656
+
Genic
1167
NC_003070.9
4030828
4030840
AATCAC
12
+
2
AATCAC
AT1G11930
4028595
4030656
+
Intergenic
2233