Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5726 to 5750 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4090468
4090481
AAAGCC
13
-
2
TTGGCT
ELP
4089664
4090857
-
Exon
376
NC_003070.9
4090615
4090627
AGCT
12
+
3
CTAG
ELP
4089664
4090857
-
Exon
230
NC_003070.9
4090941
4090954
AACGAC
13
-
2
TCGTTG
ELP
4089664
4090857
-
Intergenic
-84
NC_003070.9
4090992
4091014
ACAT
22
-
5
ATGT
ELP
4089664
4090857
-
Intergenic
-135
NC_003070.9
4091011
4091180
AAT
169
-
56
TAT
ELP
4089664
4090857
-
Intergenic
-154
NC_003070.9
4091499
4091511
AAAAAG
12
+
2
GAAAAA
ELP
4089664
4090857
-
Intergenic
-642
NC_003070.9
4092064
4092076
ACATAT
12
+
2
TACATA
ELP
4089664
4090857
-
Intergenic
-1207
NC_003070.9
4092820
4092832
ACATCT
12
-
2
ATGTAG
ELP
4089664
4090857
-
Intergenic
-1963
NC_003070.9
4093044
4093059
AATC
15
+
3
CAAT
ELP
4089664
4090857
-
Intergenic
-2187
NC_003070.9
4093121
4093133
AAAG
12
+
3
AAAG
AT1G12100
4095246
4095883
+
Intergenic
-2113
NC_003070.9
4093431
4093443
AACTC
12
+
2
CAACT
AT1G12100
4095246
4095883
+
Intergenic
-1803
NC_003070.9
4094327
4094346
AACTC
19
-
3
TTGAG
AT1G12100
4095246
4095883
+
Intergenic
-900
NC_003070.9
4094747
4094759
AACAT
12
+
2
ATAAC
AT1G12100
4095246
4095883
+
Intergenic
-487
NC_003070.9
4096345
4096359
AACCCT
14
-
2
GGGTTA
AT1G12100
4095246
4095883
+
Intergenic
1099
NC_003070.9
4096918
4096932
AAAAT
14
-
2
TTTTA
AT1G12100
4095246
4095883
+
Intergenic
1672
NC_003070.9
4098078
4098091
AAATGT
13
+
2
AATGTA
AT1G12100
4095246
4095883
+
Intergenic
2832
NC_003070.9
4098388
4098400
AAT
12
-
4
ATT
AT1G12100
4095246
4095883
+
Intergenic
3142
NC_003070.9
4098599
4098611
AAATTT
12
+
2
AAATTT
AT1G12100
4095246
4095883
+
Intergenic
3353
NC_003070.9
4098908
4098920
AAAAT
12
-
2
ATTTT
AT1G12100
4095246
4095883
+
Intergenic
3662
NC_003070.9
4100181
4100194
AAAGCT
13
-
2
TTAGCT
AT1G12100
4095246
4095883
+
Intergenic
4935
NC_003070.9
4102323
4102337
AAAAGT
14
-
2
TTTTAC
NRT1.1
4105223
4109601
+
Intergenic
-2886
NC_003070.9
4103125
4103139
A
14
-
14
T
NRT1.1
4105223
4109601
+
Intergenic
-2084
NC_003070.9
4103225
4103237
AAAATT
12
+
2
AAAATT
NRT1.1
4105223
4109601
+
Intergenic
-1986
NC_003070.9
4103425
4103437
AAAATG
12
-
2
CATTTT
NRT1.1
4105223
4109601
+
Intergenic
-1786
NC_003070.9
4103520
4103532
AAATT
12
-
2
TTAAT
NRT1.1
4105223
4109601
+
Intergenic
-1691