Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5776 to 5800 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4116532
4116544
AAATAC
12
+
2
CAAATA
AT1G12120
4114674
4117614
-
Genic
1070
NC_003070.9
4117669
4117681
AAT
12
-
4
TTA
AT1G12120
4114674
4117614
-
Intergenic
-55
NC_003070.9
4118640
4118654
AGCCGG
14
+
2
CGGAGC
AT1G12130
4118594
4120959
+
Genic
46
NC_003070.9
4119821
4119834
ACTATC
13
-
2
GTGATA
AT1G12130
4118594
4120959
+
Genic
1227
NC_003070.9
4120014
4120026
AAAATT
12
-
2
TTTAAT
AT1G12130
4118594
4120959
+
Genic
1420
NC_003070.9
4120793
4120805
ATC
12
-
4
GAT
AT1G12130
4118594
4120959
+
Genic
2199
NC_003070.9
4120972
4120984
AAAATG
12
+
2
AAAATG
AT1G12130
4118594
4120959
+
Intergenic
2378
NC_003070.9
4120995
4121008
AATTCC
13
+
2
TTCCAA
AT1G12130
4118594
4120959
+
Intergenic
2401
NC_003070.9
4121432
4121446
AGCCGG
14
+
2
CGGAGC
FMO GS-OX5
4121285
4124595
+
Exon
147
NC_003070.9
4122135
4122147
AAAGAT
12
-
2
ATCTTT
FMO GS-OX5
4121285
4124595
+
Intron
850
NC_003070.9
4122245
4122259
AAAATG
14
-
2
TTTTCA
FMO GS-OX5
4121285
4124595
+
Intron
960
NC_003070.9
4123867
4123879
AAGATG
12
-
2
TCATCT
FMO GS-OX5
4121285
4124595
+
Intron
2582
NC_003070.9
4125009
4125021
AACAT
12
+
2
AACAT
AT1G12150
4123530
4125651
-
Genic
630
NC_003070.9
4127040
4127053
AATATG
13
+
2
GAATAT
AT1G12160
4125990
4128310
+
Genic
1050
NC_003070.9
4130395
4130408
AATC
13
+
3
ATCA
AT1G12180
4130396
4131168
+
Genic
-1
NC_003070.9
4132671
4132683
AAATGT
12
-
2
CATTTA
AT1G12190
4132967
4134094
-
Intergenic
1411
NC_003070.9
4132728
4132741
AAAATT
13
+
2
AAATTA
AT1G12190
4132967
4134094
-
Intergenic
1353
NC_003070.9
4132952
4132964
AAGAAT
12
+
2
AAGAAT
AT1G12190
4132967
4134094
-
Intergenic
1130
NC_003070.9
4133002
4133014
AATAGG
12
+
2
AGGAAT
AT1G12190
4132967
4134094
-
Genic
1080
NC_003070.9
4133625
4133638
ACTATG
13
+
2
GACTAT
AT1G12190
4132967
4134094
-
Genic
456
NC_003070.9
4134026
4134038
AGAGAT
12
+
2
AGAGAT
AT1G12190
4132967
4134094
-
Genic
56
NC_003070.9
4134671
4134683
AAT
12
-
4
ATT
AT1G12190
4132967
4134094
-
Intergenic
-577
NC_003070.9
4135884
4135902
A
18
+
18
A
AT1G08885
4135434
4135988
-
Genic
86
NC_003070.9
4137676
4137690
AGCCGG
14
+
2
CGGAGC
FMO
4137511
4140158
+
Exon
165
NC_003070.9
4137814
4137831
ACCCG
17
+
3
CGACC
FMO
4137511
4140158
+
Exon
303