Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5951 to 5975 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4233491
4233505
A
14
-
14
T
ARK3
4233717
4238795
-
Intergenic
5290
NC_003070.9
4233593
4233610
AAAAT
17
+
3
ATAAA
ARK3
4233717
4238795
-
Intergenic
5185
NC_003070.9
4233821
4233833
AAAAT
12
+
2
AAAAT
ARK3
4233717
4238795
-
Exon
4962
NC_003070.9
4234089
4234101
AACCG
12
-
2
TTCGG
ARK3
4233717
4238795
-
Exon
4694
NC_003070.9
4237735
4237748
ACCAGT
13
+
2
TACCAG
ARK3
4233717
4238795
-
Exon
1047
NC_003070.9
4240396
4240417
AAAGTG
21
+
3
AAGTGA
AT1G12440
4241421
4243229
-
Intergenic
2812
NC_003070.9
4240726
4240738
AATGCC
12
-
2
GCATTG
AT1G12440
4241421
4243229
-
Intergenic
2491
NC_003070.9
4241318
4241330
AAGCTG
12
-
2
CTTCAG
AT1G12440
4241421
4243229
-
Intergenic
1899
NC_003070.9
4242416
4242428
AAACCT
12
-
2
TTTAGG
AT1G12440
4241421
4243229
-
Genic
801
NC_003070.9
4245873
4245888
A
15
-
15
T
AT1G12450
4243904
4245993
+
Genic
1969
NC_003070.9
4245889
4245901
AAGAAT
12
-
2
TTATTC
AT1G12450
4243904
4245993
+
Genic
1985
NC_003070.9
4246521
4246535
A
14
+
14
A
AT1G12450
4243904
4245993
+
Intergenic
2617
NC_003070.9
4246729
4246742
ACAGAG
13
-
2
TGTCTC
AT1G12460
4247218
4250758
+
Intergenic
-476
NC_003070.9
4247636
4247650
AACCCG
14
-
2
TTCGGG
AT1G12460
4247218
4250758
+
Genic
418
NC_003070.9
4248637
4248649
AAATCC
12
-
2
TTTGGA
AT1G12460
4247218
4250758
+
Genic
1419
NC_003070.9
4248794
4248807
AATCTC
13
+
2
AATCTC
AT1G12460
4247218
4250758
+
Genic
1576
NC_003070.9
4250232
4250244
AAGATC
12
-
2
TCTTGA
AT1G12460
4247218
4250758
+
Genic
3014
NC_003070.9
4250965
4250977
ACAGAG
12
+
2
GACAGA
AT1G12470
4250945
4257392
+
Genic
20
NC_003070.9
4251540
4251554
AAAAAG
14
-
2
TTCTTT
AT1G12470
4250945
4257392
+
Genic
595
NC_003070.9
4253131
4253143
AACCTT
12
-
2
TAAGGT
AT1G12470
4250945
4257392
+
Genic
2186
NC_003070.9
4253995
4254007
AAAAAT
12
-
2
TTTTAT
AT1G12470
4250945
4257392
+
Genic
3050
NC_003070.9
4254814
4254826
AAAAG
12
-
2
TTTTC
AT1G12470
4250945
4257392
+
Genic
3869
NC_003070.9
4254945
4254958
AAACTG
13
-
2
TTCAGT
AT1G12470
4250945
4257392
+
Genic
4000
NC_003070.9
4255945
4255957
AGCCTC
12
-
2
GGCTGA
AT1G12470
4250945
4257392
+
Genic
5000
NC_003070.9
4257256
4257269
AATGTG
13
+
2
AATGTG
OZS1
4257268
4259300
-
Exon
2031
