Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5901 to 5925 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4210030
4210045
AAATT
15
-
3
TAATT
PHR1
4206360
4208999
-
Intergenic
-1031
NC_003070.9
4210746
4210758
AAAT
12
-
3
TTTA
PHR1
4206360
4208999
-
Intergenic
-1747
NC_003070.9
4211818
4211830
AATGGC
12
-
2
TTGCCA
AT1G12380
4214258
4217412
-
Intergenic
5582
NC_003070.9
4212302
4212315
ACATAT
13
+
2
ATACAT
AT1G12380
4214258
4217412
-
Intergenic
5097
NC_003070.9
4212317
4212329
AAAATT
12
+
2
TTAAAA
AT1G12380
4214258
4217412
-
Intergenic
5083
NC_003070.9
4212453
4212466
A
13
-
13
T
AT1G12380
4214258
4217412
-
Intergenic
4946
NC_003070.9
4213930
4213946
AATCAT
16
+
2
TCATAA
AT1G12380
4214258
4217412
-
Intergenic
3466
NC_003070.9
4214322
4214334
AAATAC
12
+
2
AAATAC
AT1G12380
4214258
4217412
-
Genic
3078
NC_003070.9
4215461
4215478
ACT
17
+
5
ACT
AT1G12380
4214258
4217412
-
Genic
1934
NC_003070.9
4216475
4216492
AAGAGG
17
+
2
AGAGGA
AT1G12380
4214258
4217412
-
Genic
920
NC_003070.9
4216802
4216814
AGCAGG
12
+
2
AGGAGC
AT1G12380
4214258
4217412
-
Genic
598
NC_003070.9
4216815
4216829
AGG
14
+
4
GGA
AT1G12380
4214258
4217412
-
Genic
583
NC_003070.9
4216827
4216843
ACC
16
-
5
GGT
AT1G12380
4214258
4217412
-
Genic
569
NC_003070.9
4217900
4217912
AACAC
12
-
2
TGTGT
AT1G12380
4214258
4217412
-
Intergenic
-488
NC_003070.9
4218543
4218555
AC
12
+
6
CA
AT1G12380
4214258
4217412
-
Intergenic
-1131
NC_003070.9
4218556
4218571
AC
15
+
7
AC
AT1G12380
4214258
4217412
-
Intergenic
-1144
NC_003070.9
4218628
4218644
AACTTG
16
+
2
CTTGAA
AT1G12380
4214258
4217412
-
Intergenic
-1216
NC_003070.9
4219519
4219531
AAAAAT
12
+
2
AAATAA
AT1G12390
4220044
4221803
+
Intergenic
-513
NC_003070.9
4219717
4219729
AATCTC
12
+
2
AATCTC
AT1G12390
4220044
4221803
+
Intergenic
-315
NC_003070.9
4219772
4219787
AAAG
15
+
3
AAAG
AT1G12390
4220044
4221803
+
Intergenic
-257
NC_003070.9
4219981
4219994
AAACCC
13
+
2
CCCAAA
AT1G12390
4220044
4221803
+
Intergenic
-50
NC_003070.9
4220271
4220289
AG
18
+
9
GA
AT1G12390
4220044
4221803
+
Genic
227
NC_003070.9
4220942
4220954
AAATTC
12
-
2
TGAATT
AT1G12390
4220044
4221803
+
Genic
898
NC_003070.9
4222051
4222063
AAATAG
12
-
2
CTATTT
AT1G12400
4221779
4222875
+
Genic
272
NC_003070.9
4222407
4222419
AAAC
12
-
3
TTTG
AT1G12400
4221779
4222875
+
Genic
628