Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6726 to 6750 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4767097
4767109
AAAAT
12
-
2
ATTTT
AT1G13940
4762479
4766852
-
Intergenic
-245
NC_003070.9
4767259
4767271
AAAG
12
-
3
TCTT
AT1G13940
4762479
4766852
-
Intergenic
-407
NC_003070.9
4767332
4767346
A
14
+
14
A
AT1G13940
4762479
4766852
-
Intergenic
-480
NC_003070.9
4767834
4767846
AAGCCT
12
-
2
TTAGGC
AT1G13940
4762479
4766852
-
Intergenic
-982
NC_003070.9
4767960
4767972
AAAAAG
12
-
2
TTTTCT
AT1G13940
4762479
4766852
-
Intergenic
-1108
NC_003070.9
4768994
4769009
A
15
+
15
A
AT1G13940
4762479
4766852
-
Intergenic
-2142
NC_003070.9
4769129
4769152
AAAAT
23
-
4
TTTAT
AT1G13940
4762479
4766852
-
Intergenic
-2277
NC_003070.9
4769384
4769397
AAATTG
13
+
2
ATTGAA
AT1G13940
4762479
4766852
-
Intergenic
-2532
NC_003070.9
4769887
4769899
AAAAG
12
+
2
AAGAA
AT1G05037
4772747
4772952
-
Intergenic
3053
NC_003070.9
4770925
4770938
AAAAG
13
+
2
AAAAG
AT1G05037
4772747
4772952
-
Intergenic
2014
NC_003070.9
4771765
4771780
AAAAT
15
+
3
AAAAT
AT1G05037
4772747
4772952
-
Intergenic
1172
NC_003070.9
4772179
4772191
A
12
-
12
T
AT1G05037
4772747
4772952
-
Intergenic
761
NC_003070.9
4773181
4773199
AACCAC
18
-
3
GGTTGT
AT1G05037
4772747
4772952
-
Intergenic
-229
NC_003070.9
4774210
4774223
AAAAAC
13
-
2
TTTTGT
ELF5A-1
4773434
4774935
+
Intron
776
NC_003070.9
4774698
4774714
AAG
16
-
5
TTC
ELF5A-1
4773434
4774935
+
Exon
1264
NC_003070.9
4775104
4775116
AAAAAG
12
-
2
TTTCTT
ELF5A-1
4773434
4774935
+
Intergenic
1670
NC_003070.9
4775825
4775837
AAAAG
12
-
2
TTTTC
WRKY4
4776283
4779420
+
Intergenic
-446
NC_003070.9
4775916
4775929
AAAAAG
13
-
2
TCTTTT
WRKY4
4776283
4779420
+
Intergenic
-354
NC_003070.9
4776166
4776178
AAAT
12
+
3
AAAT
WRKY4
4776283
4779420
+
Intergenic
-105
NC_003070.9
4776384
4776396
A
12
+
12
A
WRKY4
4776283
4779420
+
Exon
101
NC_003070.9
4776846
4776866
AGC
20
-
6
GCT
WRKY4
4776283
4779420
+
Exon
563
NC_003070.9
4776966
4776980
AATCTC
14
+
2
TCTCAA
WRKY4
4776283
4779420
+
Exon
683
NC_003070.9
4777099
4777111
A
12
-
12
T
WRKY4
4776283
4779420
+
Exon
816
NC_003070.9
4777178
4777191
AAAAAC
13
-
2
TTGTTT
WRKY4
4776283
4779420
+
Exon
895
NC_003070.9
4777182
4777194
AAAAC
12
-
2
TTTTG
WRKY4
4776283
4779420
+
Exon
899