Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6751 to 6775 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4777802
4777814
AATGCC
12
+
2
GCCAAT
WRKY4
4776283
4779420
+
Exon
1519
NC_003070.9
4779327
4779339
AAAATG
12
+
2
ATGAAA
WRKY4
4776283
4779420
+
Exon
3044
NC_003070.9
4779685
4779703
AATC
18
-
4
ATTG
AT1G13970
4779351
4782546
-
Genic
2843
NC_003070.9
4780960
4780972
AAGCTG
12
+
2
AGCTGA
AT1G13970
4779351
4782546
-
Genic
1574
NC_003070.9
4781441
4781456
AATCAG
15
+
2
ATCAGA
AT1G13970
4779351
4782546
-
Genic
1090
NC_003070.9
4782397
4782410
AAG
13
+
4
AGA
AT1G13970
4779351
4782546
-
Genic
136
NC_003070.9
4782516
4782528
AACAAT
12
+
2
CAATAA
AT1G13970
4779351
4782546
-
Genic
18
NC_003070.9
4782530
4782545
AAACAG
15
+
2
AAACAG
AT1G13970
4779351
4782546
-
Genic
1
NC_003070.9
4782706
4782719
AAT
13
-
4
ATT
AT1G13970
4779351
4782546
-
Intergenic
-160
NC_003070.9
4783766
4783778
AGCTAT
12
+
2
AGCTAT
AT1G13970
4779351
4782546
-
Intergenic
-1220
NC_003070.9
4784997
4785009
ACAGT
12
-
2
ACTGT
AT1G13970
4779351
4782546
-
Intergenic
-2451
NC_003070.9
4785071
4785084
AAAAAG
13
+
2
AAAAAG
AT1G13970
4779351
4782546
-
Intergenic
-2525
NC_003070.9
4785330
4785342
AACTTC
12
+
2
AACTTC
AT1G13970
4779351
4782546
-
Intergenic
-2784
NC_003070.9
4785646
4785658
AAAATC
12
+
2
AATCAA
GN
4788463
4794654
+
Intergenic
-2805
NC_003070.9
4785686
4785702
AAATT
16
-
3
TTAAT
GN
4788463
4794654
+
Intergenic
-2761
NC_003070.9
4786615
4786628
AATATT
13
+
2
ATTAAT
GN
4788463
4794654
+
Intergenic
-1835
NC_003070.9
4787155
4787167
AAAAAT
12
+
2
AAAATA
GN
4788463
4794654
+
Intergenic
-1296
NC_003070.9
4787171
4787183
AAAAAT
12
+
2
ATAAAA
GN
4788463
4794654
+
Intergenic
-1280
NC_003070.9
4788253
4788265
A
12
+
12
A
GN
4788463
4794654
+
Intergenic
-198
NC_003070.9
4788522
4788537
AAAAAT
15
-
2
TTTATT
GN
4788463
4794654
+
Exon
59
NC_003070.9
4792812
4792824
AAGGGC
12
+
2
GCAAGG
GN
4788463
4794654
+
Exon
4349
NC_003070.9
4793122
4793134
AGGATG
12
+
2
GAGGAT
GN
4788463
4794654
+
Exon
4659
NC_003070.9
4794119
4794132
AAAGTG
13
+
2
TGAAAG
GN
4788463
4794654
+
Exon
5656
NC_003070.9
4794450
4794463
AAAGTG
13
+
2
GTGAAA
GN
4788463
4794654
+
Exon
5987
NC_003070.9
4794675
4794687
AAAAG
12
-
2
TTTTC
AT1G13990
4794664
4796599
+
Genic
11