Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6826 to 6850 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4826700
4826712
ATCCGC
12
+
2
GCATCC
FUT8
4827961
4829587
+
Intergenic
-1249
NC_003070.9
4826710
4826722
AGCCCC
12
+
2
CCAGCC
FUT8
4827961
4829587
+
Intergenic
-1239
NC_003070.9
4827466
4827479
ACACCG
13
+
2
ACACCG
FUT8
4827961
4829587
+
Intergenic
-482
NC_003070.9
4827876
4827888
AAACCC
12
-
2
GTTTGG
FUT8
4827961
4829587
+
Intergenic
-73
NC_003070.9
4829712
4829725
AAATTT
13
+
2
TTTAAA
FUT8
4827961
4829587
+
Intergenic
1751
NC_003070.9
4831949
4831963
AAAT
14
+
3
AATA
FUT9
4830297
4831915
+
Intergenic
1652
NC_003070.9
4832013
4832025
AACTGG
12
+
2
GAACTG
FUT9
4830297
4831915
+
Intergenic
1716
NC_003070.9
4832416
4832429
AAAAAG
13
-
2
TTTTTC
AT1G05053
4832651
4832858
+
Intergenic
-222
NC_003070.9
4833581
4833594
AAAAAT
13
+
2
AAAAAT
AT1G14120
4833396
4835089
-
Genic
1495
NC_003070.9
4834356
4834368
A
12
+
12
A
AT1G14120
4833396
4835089
-
Genic
721
NC_003070.9
4834695
4834707
AAAGAC
12
+
2
CAAAGA
AT1G14120
4833396
4835089
-
Genic
382
NC_003070.9
4835670
4835683
AAAAAG
13
-
2
TTTTCT
AT1G14130
4835724
4837771
-
Intergenic
2088
NC_003070.9
4836675
4836687
AAAAAG
12
+
2
AAAGAA
AT1G14130
4835724
4837771
-
Genic
1084
NC_003070.9
4837608
4837624
A
16
-
16
T
AT1G14130
4835724
4837771
-
Genic
147
NC_003070.9
4837656
4837669
AAG
13
+
4
AGA
AT1G14130
4835724
4837771
-
Genic
102
NC_003070.9
4839863
4839880
AAAAAC
17
+
2
AAAAAC
PnsL2
4839801
4840823
+
Exon
62
NC_003070.9
4841058
4841071
AAATTT
13
+
2
AAATTT
AT1G14160
4840562
4841848
-
Genic
777
NC_003070.9
4842988
4843000
AAGCGT
12
+
2
AAGCGT
AT1G14170
4843184
4845913
-
Intergenic
2913
NC_003070.9
4843236
4843249
AAATAG
13
+
2
TAGAAA
AT1G14170
4843184
4845913
-
Genic
2664
NC_003070.9
4843487
4843499
AATTCG
12
+
2
GAATTC
AT1G14170
4843184
4845913
-
Genic
2414
NC_003070.9
4843533
4843546
AATC
13
-
3
TTGA
AT1G14170
4843184
4845913
-
Genic
2367
NC_003070.9
4843815
4843827
AAAGTG
12
-
2
TTTCAC
AT1G14170
4843184
4845913
-
Genic
2086
NC_003070.9
4843884
4843896
AAGATG
12
-
2
TCTTCA
AT1G14170
4843184
4845913
-
Genic
2017
NC_003070.9
4844184
4844196
AAAAAG
12
+
2
AAAAGA
AT1G14170
4843184
4845913
-
Genic
1717
NC_003070.9
4844233
4844246
ATC
13
+
4
ATC
AT1G14170
4843184
4845913
-
Genic
1667