Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6851 to 6875 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4844673
4844685
AAAGTC
12
+
2
TCAAAG
AT1G14170
4843184
4845913
-
Genic
1228
NC_003070.9
4845573
4845585
AAACAC
12
+
2
ACACAA
AT1G14170
4843184
4845913
-
Genic
328
NC_003070.9
4845841
4845854
AAATAT
13
+
2
TAAATA
AT1G14170
4843184
4845913
-
Genic
59
NC_003070.9
4846374
4846386
AATTAG
12
+
2
GAATTA
AT1G14170
4843184
4845913
-
Intergenic
-461
NC_003070.9
4847326
4847338
AAAGT
12
-
2
CTTTA
AT1G14180
4847162
4849413
+
Genic
164
NC_003070.9
4848814
4848827
AACCGG
13
+
2
AACCGG
AT1G14180
4847162
4849413
+
Genic
1652
NC_003070.9
4849677
4849690
AATGAC
13
+
2
ATGACA
AT1G14180
4847162
4849413
+
Intergenic
2515
NC_003070.9
4849981
4849997
AAAAAG
16
+
2
AAAAGA
AT1G14185
4850117
4852096
+
Intergenic
-120
NC_003070.9
4850257
4850269
AATCTG
12
+
2
TCTGAA
AT1G14185
4850117
4852096
+
Genic
140
NC_003070.9
4852236
4852248
AACCTT
12
-
2
GGTTAA
AT1G14185
4850117
4852096
+
Intergenic
2119
NC_003070.9
4852624
4852636
AATCTC
12
+
2
TCTCAA
AT1G14190
4852522
4854307
+
Genic
102
NC_003070.9
4854421
4854435
AAAACG
14
+
2
AAACGA
AT1G14200
4854224
4855287
-
Genic
852
NC_003070.9
4854454
4854473
AAACCT
19
+
3
AAACCT
AT1G14200
4854224
4855287
-
Genic
814
NC_003070.9
4855162
4855179
AAG
17
+
5
AAG
AT1G14200
4854224
4855287
-
Genic
108
NC_003070.9
4856728
4856740
AATTGC
12
+
2
AATTGC
AT1G14205
4855533
4856762
+
Genic
1195
NC_003070.9
4859857
4859870
AAAAT
13
-
2
TTTTA
AT1G14220
4858450
4859661
-
Intergenic
-196
NC_003070.9
4860272
4860287
AAAT
15
-
3
TTTA
AT1G14220
4858450
4859661
-
Intergenic
-611
NC_003070.9
4860747
4860765
AAACTT
18
+
3
TTAAAC
AT1G14230
4861168
4864094
+
Intergenic
-403
NC_003070.9
4860843
4860855
AAGGAG
12
+
2
GAAGGA
AT1G14230
4861168
4864094
+
Intergenic
-313
NC_003070.9
4860973
4860985
AAATC
12
-
2
TTTGA
AT1G14230
4861168
4864094
+
Intergenic
-183
NC_003070.9
4860998
4861014
AAATC
16
-
3
TTTGA
AT1G14230
4861168
4864094
+
Intergenic
-154
NC_003070.9
4861893
4861905
ACTC
12
-
3
GAGT
AT1G14230
4861168
4864094
+
Genic
725
NC_003070.9
4864047
4864059
ACATAT
12
-
2
ATGTAT
AT1G14230
4861168
4864094
+
Genic
2879
NC_003070.9
4864160
4864174
AAAATG
14
+
2
TGAAAA
AT1G14230
4861168
4864094
+
Intergenic
2992
NC_003070.9
4864474
4864487
AAAAAT
13
-
2
TTTTTA
AT1G14230
4861168
4864094
+
Intergenic
3306