Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7551 to 7575 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
5334782
5334794
ACCAGT
12
+
2
CCAGTA
ABCG40
5331858
5338326
-
Exon
3532
NC_003070.9
5336820
5336832
AATATC
12
+
2
ATATCA
ABCG40
5331858
5338326
-
Exon
1494
NC_003070.9
5337814
5337826
A
12
+
12
A
ABCG40
5331858
5338326
-
Intron
500
NC_003070.9
5338797
5338809
AAAAAC
12
+
2
AAAACA
ABCG40
5331858
5338326
-
Intergenic
-471
NC_003070.9
5339090
5339102
AATATG
12
-
2
ATATTC
AT1G08915
5339715
5339922
-
Intergenic
820
NC_003070.9
5339922
5339949
A
27
+
27
A
AT1G08915
5339715
5339922
-
Genic
0
NC_003070.9
5340924
5340938
AAG
14
-
4
TCT
AT1G15530
5339961
5341931
-
Genic
993
NC_003070.9
5341040
5341052
AAG
12
+
4
AGA
AT1G15530
5339961
5341931
-
Genic
879
NC_003070.9
5341657
5341669
ACCCG
12
-
2
GTCGG
AT1G15530
5339961
5341931
-
Genic
262
NC_003070.9
5341847
5341860
AAGAGG
13
+
2
GGAAGA
AT1G15530
5339961
5341931
-
Genic
71
NC_003070.9
5341973
5341985
AAAGGG
12
+
2
GGGAAA
AT1G15530
5339961
5341931
-
Intergenic
-42
NC_003070.9
5342975
5342989
AT
14
+
7
AT
AT1G15540
5342090
5343876
+
Genic
885
NC_003070.9
5343493
5343505
AGATGG
12
+
2
TGGAGA
AT1G15540
5342090
5343876
+
Genic
1403
NC_003070.9
5345278
5345292
AAAAC
14
-
2
TTTTG
GA3OX1
5344388
5346342
-
Intron
1050
NC_003070.9
5345546
5345559
AAGTAC
13
+
2
ACAAGT
GA3OX1
5344388
5346342
-
Intron
783
NC_003070.9
5345888
5345900
ACCTCG
12
-
2
GGTCGA
GA3OX1
5344388
5346342
-
Exon
442
NC_003070.9
5346570
5346583
AAAG
13
+
3
AAAG
GA3OX1
5344388
5346342
-
Intergenic
-228
NC_003070.9
5346608
5346620
AAAAC
12
-
2
TTTGT
GA3OX1
5344388
5346342
-
Intergenic
-266
NC_003070.9
5346827
5346839
AATC
12
-
3
TTGA
GA3OX1
5344388
5346342
-
Intergenic
-485
NC_003070.9
5347049
5347062
AAAT
13
+
3
AAAT
GA3OX1
5344388
5346342
-
Intergenic
-707
NC_003070.9
5347204
5347216
ATCG
12
+
3
CGAT
GA3OX1
5344388
5346342
-
Intergenic
-862
NC_003070.9
5348734
5348746
A
12
-
12
T
GA3OX1
5344388
5346342
-
Intergenic
-2392
NC_003070.9
5349053
5349065
ACACTC
12
-
2
GTGTGA
GA3OX1
5344388
5346342
-
Intergenic
-2711
NC_003070.9
5349319
5349331
AAAAT
12
-
2
TATTT
GA3OX1
5344388
5346342
-
Intergenic
-2977
NC_003070.9
5350433
5350451
AT
18
+
9
AT
GA3OX1
5344388
5346342
-
Intergenic
-4091
