Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7976 to 8000 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
5651982
5651994
AAAAT
12
-
2
TATTT
ASL9
5651268
5652883
-
Intron
889
NC_003070.9
5653113
5653125
AATTC
12
-
2
ATTGA
ASL9
5651268
5652883
-
Intergenic
-230
NC_003070.9
5653674
5653686
AATTCC
12
-
2
AATTGG
ASL9
5651268
5652883
-
Intergenic
-791
NC_003070.9
5653719
5653771
AT
52
+
26
AT
ASL9
5651268
5652883
-
Intergenic
-836
NC_003070.9
5654096
5654108
AACACT
12
-
2
TAGTGT
ASL9
5651268
5652883
-
Intergenic
-1213
NC_003070.9
5654128
5654151
ACACAT
23
-
3
TATGTG
ASL9
5651268
5652883
-
Intergenic
-1245
NC_003070.9
5654146
5654160
AAACAT
14
-
2
TATGTT
ASL9
5651268
5652883
-
Intergenic
-1263
NC_003070.9
5654227
5654245
AG
18
+
9
AG
ASL9
5651268
5652883
-
Intergenic
-1344
NC_003070.9
5657759
5657772
AAAAT
13
+
2
TAAAA
ABA3
5659370
5665488
+
Intergenic
-1598
NC_003070.9
5657775
5657789
AAAAT
14
+
2
ATAAA
ABA3
5659370
5665488
+
Intergenic
-1581
NC_003070.9
5657792
5657806
AAAAT
14
+
2
ATAAA
ABA3
5659370
5665488
+
Intergenic
-1564
NC_003070.9
5657930
5657944
AT
14
+
7
TA
ABA3
5659370
5665488
+
Intergenic
-1426
NC_003070.9
5658043
5658055
AAATT
12
-
2
ATTTA
ABA3
5659370
5665488
+
Intergenic
-1315
NC_003070.9
5658182
5658198
AAAAAG
16
+
2
AAAAGA
ABA3
5659370
5665488
+
Intergenic
-1172
NC_003070.9
5658443
5658457
AACCCG
14
+
2
CCGAAC
ABA3
5659370
5665488
+
Intergenic
-913
NC_003070.9
5658501
5658519
AAACCC
18
+
3
AAACCC
ABA3
5659370
5665488
+
Intergenic
-851
NC_003070.9
5658738
5658750
AACCCG
12
+
2
CGAACC
ABA3
5659370
5665488
+
Intergenic
-620
NC_003070.9
5658743
5658755
AACCG
12
+
2
CCGAA
ABA3
5659370
5665488
+
Intergenic
-615
NC_003070.9
5658806
5658820
AACCCG
14
+
2
AACCCG
ABA3
5659370
5665488
+
Intergenic
-550
NC_003070.9
5659368
5659380
AAAAT
12
-
2
TATTT
ABA3
5659370
5665488
+
Exon
-2
NC_003070.9
5659779
5659791
AAACAT
12
-
2
TTATGT
ABA3
5659370
5665488
+
Intron
409
NC_003070.9
5661710
5661722
AAGAAT
12
-
2
TTATTC
ABA3
5659370
5665488
+
Intron
2340
NC_003070.9
5662551
5662563
ATATC
12
+
2
ATATC
ABA3
5659370
5665488
+
Intron
3181
NC_003070.9
5665512
5665525
AAAAAG
13
-
2
TTTTTC
ABA3
5659370
5665488
+
Intergenic
6142
NC_003070.9
5665634
5665654
ACCACG
20
-
3
GGTCGT
ABA3
5659370
5665488
+
Intergenic
6264