Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 166126 to 166150 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
24660009
24660021
AAACAT
12
+
2
AACATA
AT5G61330
24657097
24661241
-
Genic
1220
NC_003076.8
24660276
24660312
A
36
+
36
A
AT5G61330
24657097
24661241
-
Genic
929
NC_003076.8
24661012
24661026
AAAAGT
14
+
2
AAAAGT
AT5G61330
24657097
24661241
-
Genic
215
NC_003076.8
24661157
24661169
ACCG
12
-
3
TCGG
AT5G61330
24657097
24661241
-
Genic
72
NC_003076.8
24662888
24662900
AAGAGG
12
+
2
GGAAGA
AT5G61340
24661679
24663217
-
Genic
317
NC_003076.8
24663058
24663071
AAAAG
13
-
2
TTTTC
AT5G61340
24661679
24663217
-
Genic
146
NC_003076.8
24663307
24663319
AAAAAG
12
-
2
TTCTTT
AT5G61340
24661679
24663217
-
Intergenic
-90
NC_003076.8
24663557
24663570
AT
13
+
6
TA
AT5G61340
24661679
24663217
-
Intergenic
-340
NC_003076.8
24663581
24663596
AT
15
+
7
TA
AT5G61340
24661679
24663217
-
Intergenic
-364
NC_003076.8
24664096
24664109
AAGTCC
13
-
2
GACTTG
AT5G61340
24661679
24663217
-
Intergenic
-879
NC_003076.8
24665858
24665871
ACCATC
13
+
2
ACCATC
AT5G61345
24667282
24667353
+
Intergenic
-1411
NC_003076.8
24666698
24666721
A
23
-
23
T
AT5G61345
24667282
24667353
+
Intergenic
-561
NC_003076.8
24666868
24666880
AGATAT
12
-
2
ATCTAT
AT5G61345
24667282
24667353
+
Intergenic
-402
NC_003076.8
24667937
24667951
ACC
14
+
4
CCA
AT5G61350
24667873
24670749
+
Genic
64
NC_003076.8
24668011
24668023
AGG
12
-
4
CTC
AT5G61350
24667873
24670749
+
Genic
138
NC_003076.8
24669700
24669712
ACATAG
12
+
2
AGACAT
AT5G61350
24667873
24670749
+
Genic
1827
NC_003076.8
24669821
24669833
AACCCT
12
+
2
ACCCTA
AT5G61350
24667873
24670749
+
Genic
1948
NC_003076.8
24670535
24670547
A
12
-
12
T
AT5G61350
24667873
24670749
+
Genic
2662
NC_003076.8
24671293
24671305
AAATTG
12
-
2
CAATTT
AT5G61360
24670792
24671868
+
Genic
501
NC_003076.8
24673279
24673291
AAACAG
12
+
2
AGAAAC
AT5G61370
24671770
24673657
-
Genic
366
NC_003076.8
24674145
24674157
AATCAT
12
-
2
TTATGA
AT5G61370
24671770
24673657
-
Intergenic
-488
NC_003076.8
24674514
24674530
AAAAAT
16
-
2
TTTTTA
TOC1
24674963
24678550
+
Intergenic
-433
NC_003076.8
24674620
24674632
AAACG
12
+
2
AAACG
TOC1
24674963
24678550
+
Intergenic
-331
NC_003076.8
24674788
24674800
AAAAAC
12
+
2
CAAAAA
TOC1
24674963
24678550
+
Intergenic
-163
NC_003076.8
24675027
24675040
AG
13
-
6
TC
TOC1
24674963
24678550
+
Exon
64