Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 166151 to 166175 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
24675071
24675085
AAAAC
14
+
2
ACAAA
TOC1
24674963
24678550
+
Exon
108
NC_003076.8
24675129
24675141
AG
12
-
6
TC
TOC1
24674963
24678550
+
Exon
166
NC_003076.8
24677201
24677214
AAGATG
13
-
2
CTTCAT
TOC1
24674963
24678550
+
Exon
2238
NC_003076.8
24678113
24678130
AAG
17
+
5
GAA
TOC1
24674963
24678550
+
Exon
3150
NC_003076.8
24678954
24678966
ACTGCT
12
-
2
AGTAGC
AT5G61390
24678555
24681078
-
Genic
2112
NC_003076.8
24679719
24679732
ACT
13
-
4
AGT
AT5G61390
24678555
24681078
-
Genic
1346
NC_003076.8
24682155
24682167
AAAAC
12
-
2
TTTGT
AT5G61400
24681550
24683514
+
Genic
605
NC_003076.8
24684088
24684100
ACAGCT
12
+
2
ACAGCT
RPE
24683606
24686217
-
Exon
2117
NC_003076.8
24684147
24684159
AAAC
12
+
3
AACA
RPE
24683606
24686217
-
Intron
2058
NC_003076.8
24684491
24684504
AAGAG
13
+
2
GAGAA
RPE
24683606
24686217
-
Intron
1713
NC_003076.8
24685520
24685533
AAGCAT
13
+
2
CATAAG
RPE
24683606
24686217
-
Intron
684
NC_003076.8
24686645
24686659
AAAAAT
14
+
2
ATAAAA
AT5G61412
24686610
24687366
-
Genic
707
NC_003076.8
24686875
24686890
AGCAGG
15
-
2
CCTGCT
AT5G61412
24686610
24687366
-
Genic
476
NC_003076.8
24687485
24687497
AAAAGT
12
-
2
ACTTTT
AT5G61412
24686610
24687366
-
Intergenic
-119
NC_003076.8
24687627
24687639
AAGCCC
12
-
2
TGGGCT
AT5G61412
24686610
24687366
-
Intergenic
-261
NC_003076.8
24691168
24691187
A
19
-
19
T
MYB28
24689069
24691187
-
Exon
0
NC_003076.8
24692052
24692064
ACATAT
12
-
2
TATGTA
MYB28
24689069
24691187
-
Intergenic
-865
NC_003076.8
24693295
24693309
AAAAAG
14
-
2
TTCTTT
MYB28
24689069
24691187
-
Intergenic
-2108
NC_003076.8
24693615
24693631
AAAATT
16
+
2
AAAATT
MYB28
24689069
24691187
-
Intergenic
-2428
NC_003076.8
24693653
24693665
AAAAGT
12
-
2
CTTTTA
MYB28
24689069
24691187
-
Intergenic
-2466
NC_003076.8
24693877
24693892
AAATGT
15
-
2
TACATT
MYB28
24689069
24691187
-
Intergenic
-2690
NC_003076.8
24694263
24694275
AAATAT
12
+
2
AATATA
MYB28
24689069
24691187
-
Intergenic
-3076
NC_003076.8
24694351
24694365
AAAAT
14
-
2
TTTTA
MYB28
24689069
24691187
-
Intergenic
-3164
NC_003076.8
24694811
24694823
AAAAAC
12
-
2
TTTGTT
MYB28
24689069
24691187
-
Intergenic
-3624
NC_003076.8
24694830
24694842
AAAAAT
12
+
2
TAAAAA
MYB28
24689069
24691187
-
Intergenic
-3643