Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 2001 to 2025 repeats of 170418
Go To:
<<
<
79
80
81
82
83
>
>>
Clear Filters
Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
1393242
1393254
AAACTG
12
-
2
TTTCAG
SPS3F
1391434
1395953
-
Intron
2699
NC_003070.9
1393446
1393461
AT
15
+
7
TA
SPS3F
1391434
1395953
-
Intron
2492
NC_003070.9
1394599
1394611
AAGGGG
12
-
2
CTTCCC
SPS3F
1391434
1395953
-
Exon
1342
NC_003070.9
1395393
1395405
AAAATC
12
+
2
CAAAAT
SPS3F
1391434
1395953
-
Intron
548
NC_003070.9
1395843
1395855
AAAG
12
+
3
GAAA
SPS3F
1391434
1395953
-
Exon
98
NC_003070.9
1395863
1395875
AAAATG
12
+
2
TGAAAA
SPS3F
1391434
1395953
-
Exon
78
NC_003070.9
1396629
1396641
AAAGAG
12
+
2
GAAAGA
AT1G04930
1396265
1399122
-
Genic
2481
NC_003070.9
1397921
1397933
AAGAGC
12
+
2
GAGCAA
AT1G04930
1396265
1399122
-
Genic
1189
NC_003070.9
1398475
1398487
AACCC
12
+
2
ACCCA
AT1G04930
1396265
1399122
-
Genic
635
NC_003070.9
1399735
1399747
AAGGTG
12
-
2
CACCTT
Tic20-I
1399182
1400830
+
Exon
553
NC_003070.9
1400648
1400663
A
15
-
15
T
Tic20-I
1399182
1400830
+
Exon
1466
NC_003070.9
1401348
1401360
AAGGAG
12
+
2
GAGAAG
AT1G04945
1399174
1403112
+
Genic
2174
NC_003070.9
1402216
1402228
AATCCT
12
+
2
CCTAAT
AT1G04945
1399174
1403112
+
Genic
3042
NC_003070.9
1404013
1404034
AAAGGG
21
-
3
CTTTCC
TAFII59
1403085
1407531
-
Exon
3497
NC_003070.9
1405568
1405580
ACACAT
12
-
2
TATGTG
TAFII59
1403085
1407531
-
Exon
1951
NC_003070.9
1407587
1407599
AAATT
12
+
2
TTAAA
TAFII59
1403085
1407531
-
Intergenic
-56
NC_003070.9
1409030
1409043
AATGCT
13
-
2
AGCATT
AT1G04960
1407772
1410933
-
Genic
1890
NC_003070.9
1409174
1409186
AAAT
12
+
3
AATA
AT1G04960
1407772
1410933
-
Genic
1747
NC_003070.9
1409830
1409842
AAAAGC
12
+
2
AGCAAA
AT1G04960
1407772
1410933
-
Genic
1091
NC_003070.9
1410984
1410996
AAAGCT
12
-
2
AGCTTT
AT1G04960
1407772
1410933
-
Intergenic
-51
NC_003070.9
1411232
1411244
AAAGAG
12
-
2
CTTTCT
AT1G04970
1411088
1413627
+
Genic
144
NC_003070.9
1411715
1411727
AACAG
12
-
2
TTCTG
AT1G04970
1411088
1413627
+
Genic
627
NC_003070.9
1414245
1414258
AACACC
13
+
2
CCAACA
PDIL2-2
1413644
1416218
-
Exon
1960
NC_003070.9
1414516
1414528
AAAAC
12
+
2
AAACA
PDIL2-2
1413644
1416218
-
Exon
1690
NC_003070.9
1414875
1414887
AAATC
12
-
2
ATTTG
PDIL2-2
1413644
1416218
-
Intron
1331
