Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 2926 to 2950 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
2020487
2020499
AAAAAG
12
-
2
TTTTCT
AT1G06590
2016306
2024749
-
Genic
4250
NC_003070.9
2020696
2020708
AAAT
12
+
3
ATAA
AT1G06590
2016306
2024749
-
Genic
4041
NC_003070.9
2021007
2021020
A
13
+
13
A
AT1G06590
2016306
2024749
-
Genic
3729
NC_003070.9
2022343
2022356
AACTTG
13
+
2
TGAACT
AT1G06590
2016306
2024749
-
Genic
2393
NC_003070.9
2023484
2023496
AAAC
12
+
3
AAAC
AT1G06590
2016306
2024749
-
Genic
1253
NC_003070.9
2023591
2023605
AATATT
14
+
2
TAATAT
AT1G06590
2016306
2024749
-
Genic
1144
NC_003070.9
2024389
2024402
AAAAGG
13
+
2
AAAGGA
AT1G06590
2016306
2024749
-
Genic
347
NC_003070.9
2025064
2025076
AAAT
12
-
3
ATTT
AT1G06610
2025356
2025428
+
Intergenic
-280
NC_003070.9
2025229
2025241
AAAAT
12
+
2
AAAAT
AT1G06610
2025356
2025428
+
Intergenic
-115
NC_003070.9
2026756
2026769
AACT
13
+
3
CTAA
AT1G06620
2025544
2027413
+
Genic
1212
NC_003070.9
2027196
2027209
A
13
-
13
T
AT1G06620
2025544
2027413
+
Genic
1652
NC_003070.9
2029667
2029679
AAAATT
12
-
2
AATTTT
AT1G06630
2027606
2031388
+
Genic
2061
NC_003070.9
2029691
2029706
A
15
-
15
T
AT1G06630
2027606
2031388
+
Genic
2085
NC_003070.9
2030741
2030753
AAACTC
12
-
2
TGAGTT
AT1G06630
2027606
2031388
+
Genic
3135
NC_003070.9
2030784
2030796
AAACTC
12
-
2
TGAGTT
AT1G06630
2027606
2031388
+
Genic
3178
NC_003070.9
2030797
2030814
AAAGTG
17
-
2
TTTCAC
AT1G06630
2027606
2031388
+
Genic
3191
NC_003070.9
2030815
2030830
AAACTG
15
-
2
TTTCAG
AT1G06630
2027606
2031388
+
Genic
3209
NC_003070.9
2030855
2030872
AAAGTG
17
-
2
TTTCAC
AT1G06630
2027606
2031388
+
Genic
3249
NC_003070.9
2030879
2030897
AAACTG
18
-
3
TTTCAG
AT1G06630
2027606
2031388
+
Genic
3273
NC_003070.9
2030913
2030926
AAC
13
-
4
TGT
AT1G06630
2027606
2031388
+
Genic
3307
NC_003070.9
2031126
2031139
AAGCAG
13
+
2
CAGAAG
AT1G06630
2027606
2031388
+
Genic
3520
NC_003070.9
2031267
2031280
AAAGTT
13
-
2
AACTTT
AT1G06630
2027606
2031388
+
Genic
3661
NC_003070.9
2033488
2033503
A
15
-
15
T
AT1G06640
2031626
2034112
+
Genic
1862
NC_003070.9
2034717
2034729
AGATCC
12
+
2
GATCCA
AT1G06645
2034156
2035824
+
Genic
561
NC_003070.9
2035221
2035234
AAAC
13
-
3
TTTG
AT1G06645
2034156
2035824
+
Genic
1065