Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3101 to 3125 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
2145061
2145075
AATAC
14
+
2
CAATA
AT1G06980
2142939
2143977
-
Intergenic
-1084
NC_003070.9
2145439
2145451
ACGT
12
+
3
CGTA
AT1G06980
2142939
2143977
-
Intergenic
-1462
NC_003070.9
2147556
2147568
AAAC
12
-
3
TTTG
AT1G06990
2148342
2150152
+
Intergenic
-774
NC_003070.9
2148170
2148183
AAAAG
13
+
2
AAAGA
AT1G06990
2148342
2150152
+
Intergenic
-159
NC_003070.9
2149067
2149085
AAAAT
18
-
3
TTATT
AT1G06990
2148342
2150152
+
Genic
725
NC_003070.9
2149901
2149914
AACCCT
13
+
2
CCTAAC
AT1G06990
2148342
2150152
+
Genic
1559
NC_003070.9
2149965
2149978
ACTGAG
13
-
2
TCAGTC
AT1G06990
2148342
2150152
+
Genic
1623
NC_003070.9
2151757
2151772
AATTAG
15
-
2
TTCTAA
EXO70B2
2150158
2152541
-
Intron
769
NC_003070.9
2152493
2152506
ACCACG
13
+
2
CCACGA
EXO70B2
2150158
2152541
-
Exon
35
NC_003070.9
2152757
2152769
AAAAT
12
-
2
TTTTA
SLP1
2152798
2155269
+
Intergenic
-29
NC_003070.9
2152938
2152950
AATACC
12
+
2
ACCAAT
SLP1
2152798
2155269
+
Exon
140
NC_003070.9
2152974
2152986
AAGTGG
12
-
2
ACTTCC
SLP1
2152798
2155269
+
Exon
176
NC_003070.9
2153105
2153117
AGCAGG
12
-
2
CTGCTC
SLP1
2152798
2155269
+
Exon
307
NC_003070.9
2153194
2153208
AAAACC
14
-
2
GGTTTT
SLP1
2152798
2155269
+
Exon
396
NC_003070.9
2155520
2155532
ACAGAG
12
-
2
GTCTCT
AT1G04537
2155213
2155622
+
Genic
307
NC_003070.9
2156027
2156044
AT
17
+
8
AT
AT1G07020
2155213
2156153
-
Genic
109
NC_003070.9
2156679
2156704
AAG
25
+
8
AAG
AT1G04543
2156201
2156876
+
Genic
478
NC_003070.9
2159641
2159653
AACACT
12
+
2
TAACAC
AT1G07030
2158413
2160818
-
Genic
1165
NC_003070.9
2159837
2159849
AACC
12
+
3
AACC
AT1G07030
2158413
2160818
-
Genic
969
NC_003070.9
2160877
2160891
AAAAAC
14
-
2
TTGTTT
AT1G07040
2160919
2163387
-
Intergenic
2496
NC_003070.9
2160977
2160990
AACAAG
13
+
2
AGAACA
AT1G07040
2160919
2163387
-
Genic
2397
NC_003070.9
2163156
2163168
ACACG
12
-
2
TCGTG
AT1G07040
2160919
2163387
-
Genic
219
NC_003070.9
2164922
2164935
AAGATG
13
-
2
CATCTT
AT1G07050
2163575
2165261
-
Genic
326
NC_003070.9
2165086
2165108
AAG
22
-
7
TCT
AT1G07050
2163575
2165261
-
Genic
153
NC_003070.9
2165226
2165238
AAATAC
12
+
2
ATACAA
AT1G07050
2163575
2165261
-
Genic
23