Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4101 to 4125 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
2906520
2906532
AAAGAG
12
-
2
TCTTTC
SNF4
2899776
2904862
-
Intergenic
-1658
NC_003070.9
2907908
2907925
A
17
-
17
T
NF-YB4
2908611
2909032
-
Intergenic
1107
NC_003070.9
2907961
2907973
A
12
-
12
T
NF-YB4
2908611
2909032
-
Intergenic
1059
NC_003070.9
2909138
2909152
ACACAT
14
-
2
TGTGTA
NF-YB4
2908611
2909032
-
Intergenic
-106
NC_003070.9
2909856
2909874
AAATCC
18
-
3
TGGATT
NF-YB4
2908611
2909032
-
Intergenic
-824
NC_003070.9
2910093
2910105
AAG
12
-
4
CTT
NF-YB4
2908611
2909032
-
Intergenic
-1061
NC_003070.9
2910103
2910118
A
15
-
15
T
NF-YB4
2908611
2909032
-
Intergenic
-1071
NC_003070.9
2911049
2911066
AAAAAG
17
+
2
AAAAAG
AT1G09040
2911250
2915406
+
Intergenic
-184
NC_003070.9
2911906
2911918
ACACAG
12
-
2
CTGTGT
AT1G09040
2911250
2915406
+
Genic
656
NC_003070.9
2913269
2913281
AAAAAG
12
+
2
AAAGAA
AT1G09040
2911250
2915406
+
Genic
2019
NC_003070.9
2914056
2914068
AGATGG
12
+
2
GGAGAT
AT1G09040
2911250
2915406
+
Genic
2806
NC_003070.9
2916275
2916292
A
17
+
17
A
AT1G09050
2916968
2921111
+
Intergenic
-676
NC_003070.9
2916328
2916341
AAACT
13
+
2
AAACT
AT1G09050
2916968
2921111
+
Intergenic
-627
NC_003070.9
2916754
2916768
AAAAG
14
+
2
AAAAG
AT1G09050
2916968
2921111
+
Intergenic
-200
NC_003070.9
2918938
2918950
AAAAAG
12
+
2
AAAGAA
AT1G09050
2916968
2921111
+
Genic
1970
NC_003070.9
2919725
2919738
AGATGG
13
+
2
GGAGAT
AT1G09050
2916968
2921111
+
Genic
2757
NC_003070.9
2921164
2921177
ACT
13
-
4
TAG
AT1G09060
2921064
2925826
-
Genic
4649
NC_003070.9
2921754
2921766
AAACT
12
-
2
AGTTT
AT1G09060
2921064
2925826
-
Genic
4060
NC_003070.9
2923549
2923563
AAAACT
14
-
2
TTTAGT
AT1G09060
2921064
2925826
-
Genic
2263
NC_003070.9
2924385
2924399
AAAAG
14
+
2
GAAAA
AT1G09060
2921064
2925826
-
Genic
1427
NC_003070.9
2925159
2925174
AATGGC
15
-
2
CCATTG
AT1G09060
2921064
2925826
-
Genic
652
NC_003070.9
2925430
2925445
AC
15
+
7
AC
AT1G09060
2921064
2925826
-
Genic
381
NC_003070.9
2925638
2925650
AT
12
+
6
TA
AT1G09060
2921064
2925826
-
Genic
176
NC_003070.9
2925803
2925825
A
22
-
22
T
AT1G09060
2921064
2925826
-
Genic
1
NC_003070.9
2928603
2928615
AGCTCC
12
-
2
GCTGGA
SRC2
2927502
2929107
+
Exon
1101