Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4126 to 4150 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
2929088
2929102
AAAGTT
14
+
2
AGTTAA
SRC2
2927502
2929107
+
Exon
1586
NC_003070.9
2931035
2931047
ACGGAT
12
-
2
ATCCGT
BIP3
2929217
2931850
-
Intron
803
NC_003070.9
2932074
2932086
ACAT
12
-
3
GTAT
BIP3
2929217
2931850
-
Intergenic
-224
NC_003070.9
2932185
2932197
AAAAT
12
+
2
AATAA
BIP3
2929217
2931850
-
Intergenic
-335
NC_003070.9
2932384
2932397
AAATAC
13
-
2
TTGTAT
RBOHB
2932739
2936586
+
Intergenic
-342
NC_003070.9
2932628
2932645
AAAAT
17
-
3
TTATT
RBOHB
2932739
2936586
+
Intergenic
-94
NC_003070.9
2936563
2936576
AATTAT
13
+
2
ATTATA
RPT5B
2936528
2939363
-
Exon
2787
NC_003070.9
2936944
2936956
AATGTG
12
-
2
CATTCA
RPT5B
2936528
2939363
-
Exon
2407
NC_003070.9
2938616
2938629
AAAACC
13
+
2
ACCAAA
RPT5B
2936528
2939363
-
Intron
734
NC_003070.9
2940749
2940761
AAATTT
12
+
2
AAATTT
AT1G09130
2939568
2942345
-
Genic
1584
NC_003070.9
2941387
2941402
AAATGT
15
+
2
ATGTAA
AT1G09130
2939568
2942345
-
Genic
943
NC_003070.9
2942619
2942631
AAATGT
12
+
2
AATGTA
SR30
2942538
2945976
-
Exon
3345
NC_003070.9
2942626
2942638
ACATAT
12
-
2
ATGTAT
SR30
2942538
2945976
-
Exon
3338
NC_003070.9
2942877
2942889
AAAATG
12
-
2
TTTTCA
SR30
2942538
2945976
-
Exon
3087
NC_003070.9
2943187
2943208
AAGATC
21
-
3
GATCTT
SR30
2942538
2945976
-
Exon
2768
NC_003070.9
2943435
2943453
ACCAG
18
+
3
ACCAG
SR30
2942538
2945976
-
Exon
2523
NC_003070.9
2943463
2943476
AACTTG
13
-
2
AAGTTC
SR30
2942538
2945976
-
Exon
2500
NC_003070.9
2943808
2943820
AAAAGG
12
+
2
AAAGGA
SR30
2942538
2945976
-
Exon
2156
NC_003070.9
2944321
2944340
A
19
+
19
A
SR30
2942538
2945976
-
Intron
1636
NC_003070.9
2945898
2945914
AAG
16
+
5
AAG
SR30
2942538
2945976
-
Exon
62
NC_003070.9
2947365
2947377
AAACAT
12
-
2
TATGTT
AT1G09150
2946030
2949159
+
Genic
1335
NC_003070.9
2947482
2947494
AAAAC
12
-
2
TTGTT
AT1G09150
2946030
2949159
+
Genic
1452
NC_003070.9
2950567
2950579
ACAGAG
12
+
2
CAGAGA
PP2-B15
2949621
2950989
-
Intron
410
NC_003070.9
2952516
2952528
ACTGCT
12
+
2
ACTGCT
AT1G09157
2951635
2952490
-
Intergenic
-26
NC_003070.9
2952606
2952621
AAAAT
15
-
3
ATTTT
AT1G09160
2952597
2955745
-
Genic
3124
