Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 163801 to 163825 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
23092413
23092431
AAAAAT
18
-
3
TTTTTA
AT5G57060
23089909
23092224
+
Intergenic
2504
NC_003076.8
23093831
23093843
AAAAGG
12
-
2
CCTTTT
AT5G57060
23089909
23092224
+
Intergenic
3922
NC_003076.8
23094866
23094878
AATTGC
12
+
2
GCAATT
AT5G57070
23096024
23098602
+
Intergenic
-1146
NC_003076.8
23096525
23096539
AAG
14
+
4
AGA
AT5G57070
23096024
23098602
+
Genic
501
NC_003076.8
23097257
23097273
AAG
16
+
5
GAA
AT5G57070
23096024
23098602
+
Genic
1233
NC_003076.8
23097489
23097503
ACCTCC
14
+
2
CCTCCA
AT5G57070
23096024
23098602
+
Genic
1465
NC_003076.8
23097636
23097650
ACCTCC
14
+
2
CCTCCA
AT5G57070
23096024
23098602
+
Genic
1612
NC_003076.8
23100149
23100161
AATCT
12
+
2
AATCT
EIR1
23100516
23105228
+
Intergenic
-355
NC_003076.8
23100724
23100737
AAG
13
-
4
TTC
EIR1
23100516
23105228
+
Exon
208
NC_003076.8
23101154
23101166
ACTAT
12
-
2
TATAG
EIR1
23100516
23105228
+
Exon
638
NC_003076.8
23102424
23102444
AT
20
+
10
AT
EIR1
23100516
23105228
+
Intron
1908
NC_003076.8
23102521
23102534
AAT
13
-
4
TAT
EIR1
23100516
23105228
+
Intron
2005
NC_003076.8
23102647
23102659
AAT
12
+
4
AAT
EIR1
23100516
23105228
+
Intron
2131
NC_003076.8
23102905
23102921
ACTCCT
16
-
2
GGAGTA
EIR1
23100516
23105228
+
Exon
2389
NC_003076.8
23103341
23103355
AATTAT
14
+
2
TAATTA
EIR1
23100516
23105228
+
Intron
2825
NC_003076.8
23103499
23103511
ACCGGG
12
-
2
CGGTCC
EIR1
23100516
23105228
+
Exon
2983
NC_003076.8
23105442
23105454
AAATGT
12
+
2
ATGTAA
EIR1
23100516
23105228
+
Intergenic
4926
NC_003076.8
23106386
23106402
AAAAAC
16
+
2
AAAACA
AT5G57100
23106298
23108883
-
Genic
2481
NC_003076.8
23106484
23106497
AAAAAC
13
+
2
ACAAAA
AT5G57100
23106298
23108883
-
Genic
2386
NC_003076.8
23106646
23106658
AAG
12
+
4
AGA
AT5G57100
23106298
23108883
-
Genic
2225
NC_003076.8
23107126
23107138
AAAAAT
12
+
2
AAAAAT
AT5G57100
23106298
23108883
-
Genic
1745
NC_003076.8
23107341
23107353
AACCGC
12
+
2
CGCAAC
AT5G57100
23106298
23108883
-
Genic
1530
NC_003076.8
23107598
23107610
AAAAAC
12
+
2
AAACAA
AT5G57100
23106298
23108883
-
Genic
1273
NC_003076.8
23108070
23108084
AAC
14
-
4
TGT
AT5G57100
23106298
23108883
-
Genic
799
NC_003076.8
23108181
23108193
AAAATC
12
+
2
AATCAA
AT5G57100
23106298
23108883
-
Genic
690