Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 163851 to 163875 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
23121442
23121455
A
13
+
13
A
AT5G57120
23122488
23124594
-
Intergenic
3139
NC_003076.8
23122365
23122377
AAACC
12
+
2
AAACC
AT5G57120
23122488
23124594
-
Intergenic
2217
NC_003076.8
23122608
23122623
AAACTG
15
+
2
GAAACT
AT5G57120
23122488
23124594
-
Genic
1971
NC_003076.8
23122700
23122714
AAAAG
14
+
2
AAAAG
AT5G57120
23122488
23124594
-
Genic
1880
NC_003076.8
23122705
23122717
AAAAAG
12
+
2
AAAAGA
AT5G57120
23122488
23124594
-
Genic
1877
NC_003076.8
23123587
23123599
AAAAGG
12
-
2
CTTTTC
AT5G57120
23122488
23124594
-
Genic
995
NC_003076.8
23123648
23123661
AAG
13
-
4
TCT
AT5G57120
23122488
23124594
-
Genic
933
NC_003076.8
23123739
23123756
AAG
17
-
5
CTT
AT5G57120
23122488
23124594
-
Genic
838
NC_003076.8
23123833
23123850
AAG
17
-
5
TTC
AT5G57120
23122488
23124594
-
Genic
744
NC_003076.8
23124161
23124173
AATCT
12
+
2
TAATC
AT5G57120
23122488
23124594
-
Genic
421
NC_003076.8
23124618
23124630
AAAAGG
12
-
2
CTTTTC
AT5G57120
23122488
23124594
-
Intergenic
-24
NC_003076.8
23125085
23125097
AAAAAG
12
-
2
TCTTTT
AT5G57120
23122488
23124594
-
Intergenic
-491
NC_003076.8
23126195
23126209
AAATGC
14
-
2
ATTTGC
AT5G57123
23126874
23127724
-
Intergenic
1515
NC_003076.8
23126344
23126356
AAAAAT
12
-
2
ATTTTT
AT5G57123
23126874
23127724
-
Intergenic
1368
NC_003076.8
23126777
23126790
AATAGT
13
-
2
ACTATT
AT5G57123
23126874
23127724
-
Intergenic
934
NC_003076.8
23127264
23127276
AAGATC
12
-
2
TCTTGA
AT5G57123
23126874
23127724
-
Genic
448
NC_003076.8
23127450
23127462
AAAAAG
12
-
2
TCTTTT
AT5G57123
23126874
23127724
-
Genic
262
NC_003076.8
23127474
23127486
AAAACT
12
-
2
AGTTTT
AT5G57123
23126874
23127724
-
Genic
238
NC_003076.8
23127832
23127847
AAAAAT
15
+
2
AAAATA
AT5G57123
23126874
23127724
-
Intergenic
-108
NC_003076.8
23128661
23128673
A
12
-
12
T
AT5G57123
23126874
23127724
-
Intergenic
-937
NC_003076.8
23129431
23129443
AAAAAT
12
-
2
TATTTT
AT5G57123
23126874
23127724
-
Intergenic
-1707
NC_003076.8
23129926
23129939
AAAT
13
-
3
ATTT
AT5G57123
23126874
23127724
-
Intergenic
-2202
NC_003076.8
23131292
23131304
AACAT
12
+
2
ATAAC
AT5G08705
23133765
23133997
+
Intergenic
-2461
NC_003076.8
23131531
23131545
AG
14
+
7
GA
AT5G08705
23133765
23133997
+
Intergenic
-2220
NC_003076.8
23131983
23131995
AAACAT
12
-
2
TGTTTA
AT5G08705
23133765
23133997
+
Intergenic
-1770