Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 163826 to 163850 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
23108311
23108324
AAATCG
13
+
2
TCGAAA
AT5G57100
23106298
23108883
-
Genic
559
NC_003076.8
23108474
23108487
AATTCG
13
+
2
ATTCGA
AT5G57100
23106298
23108883
-
Genic
396
NC_003076.8
23108622
23108634
AAGATT
12
+
2
AGATTA
AT5G57100
23106298
23108883
-
Genic
249
NC_003076.8
23108968
23108980
AAAAAG
12
+
2
AGAAAA
AT5G57100
23106298
23108883
-
Intergenic
-85
NC_003076.8
23108971
23108983
AAAAG
12
+
2
AAAAG
AT5G57100
23106298
23108883
-
Intergenic
-88
NC_003076.8
23109639
23109651
AAACC
12
+
2
ACCAA
ACA8
23109438
23117686
-
Exon
8035
NC_003076.8
23110952
23110964
AAAGCC
12
+
2
AGCCAA
ACA8
23109438
23117686
-
Exon
6722
NC_003076.8
23111051
23111064
AG
13
+
6
AG
ACA8
23109438
23117686
-
Intron
6622
NC_003076.8
23112323
23112335
AACAC
12
+
2
ACACA
ACA8
23109438
23117686
-
Exon
5351
NC_003076.8
23113044
23113057
AAAAG
13
+
2
AAAAG
ACA8
23109438
23117686
-
Intron
4629
NC_003076.8
23113732
23113744
AACTCT
12
+
2
TCTAAC
ACA8
23109438
23117686
-
Intron
3942
NC_003076.8
23115136
23115148
AAAAAC
12
+
2
ACAAAA
ACA8
23109438
23117686
-
Intron
2538
NC_003076.8
23115504
23115521
AAAAAG
17
+
2
AAAAAG
ACA8
23109438
23117686
-
Intron
2165
NC_003076.8
23115925
23115938
AAAGGG
13
-
2
CCCTTT
ACA8
23109438
23117686
-
Exon
1748
NC_003076.8
23116499
23116513
AGCATG
14
+
2
GAGCAT
ACA8
23109438
23117686
-
Exon
1173
NC_003076.8
23117032
23117044
A
12
+
12
A
ACA8
23109438
23117686
-
Intron
642
NC_003076.8
23117188
23117205
A
17
+
17
A
ACA8
23109438
23117686
-
Intron
481
NC_003076.8
23117746
23117764
A
18
+
18
A
ACA8
23109438
23117686
-
Intergenic
-60
NC_003076.8
23117805
23117821
AAAAAG
16
+
2
AAAAGA
ACA8
23109438
23117686
-
Intergenic
-119
NC_003076.8
23118724
23118736
AAAGT
12
-
2
TTTAC
ACA8
23109438
23117686
-
Intergenic
-1038
NC_003076.8
23119045
23119058
AAATT
13
+
2
TAAAT
ACA8
23109438
23117686
-
Intergenic
-1359
NC_003076.8
23119755
23119767
AAAATG
12
+
2
AAATGA
ACA8
23109438
23117686
-
Intergenic
-2069
NC_003076.8
23120239
23120251
AAAATG
12
+
2
ATGAAA
AT5G57120
23122488
23124594
-
Intergenic
4343
NC_003076.8
23120765
23120777
AAAAAC
12
-
2
GTTTTT
AT5G57120
23122488
23124594
-
Intergenic
3817
NC_003076.8
23121163
23121175
AAGAAT
12
+
2
AATAAG
AT5G57120
23122488
23124594
-
Intergenic
3419