Wastewater surveillance in post-omicron silent phase uncovers silent waves and cryptic transmission of SARS-CoV-2 variants; a yearlong study in Western India
Vinay Rajput a b 1
,
Rinka Pramanik a b 1
,
Kiran Nannaware a
,
Vinita Malik a
,
Sejal Matra a
,
Shubham Kumar a
,
Sai Joshi a
,
Pradnya Kadam c
,
Unnati Bhalerao c
,
Manisha Tupekar c
,
Dipti Deshpande c
,
Priyanki Shah d
,
Poornima Sangewar d
,
Niharika Gogate d
,
Radhika Boargaonkar e
,
Dhawal Patil e
,
Saurabh Kale e
,
Asim Bhalerao f
,
Nidhi Jain f
,
L.S. Shashidhara c d g
…
Mahesh Dharne a b
Wastewater surveillance of severe acute respiratory syndrome coronavirus-2 in open drains of two Indian megacities captures evolutionary lineage transitions: a zonation approach
Saee Zambre, Poonam Katarmal, Shubhankar Pawar, Snehal Dawkhar, Parvati Iyer, Vinay Rajput, Pradnya Kadam, Unnati Bhalerao, Manisha Tupekar, Priyanki Shah, Krishanpal Karmodiya, Mahesh Dharne, Bishnudeo Roy & Santosh Koraktar
One Health Index Calculator for India: Using Empirical Methods for Policy Stewardship
Saveetha Meganathan, Arpit Katiyar, Esha Srivastava, Rakesh K Mishra
Enhanced Extraction of Low-Molecular Weight DNA from Wastewater for Comprehensive Assessment of Antimicrobial Resistance
Jyotsna Karan1, Sreya Mandal1, Gulafsha Khan1, Harshit Arya1, Laasya Samhita1
1Ashoka University
Early detection of KP.2 SARS-CoV-2 variant using wastewater-based genomic surveillance in Pune, Maharashtra, India
Vinay Rajput, BTech, Rashmita Das, MD, Rinka Pramanik, MSc, Kiran Nannaware, MSc, Sushma Yanamandra, MD, Nyabom Taji, MD, Vishal Rajput, MSc, Riyakshi Rajkhowa, MSc, Poonam Pacharne, BSc, DMLT, Priyanki Shah, MSc, Niharika Gogate, MSc, Poornima Sangwar, MSc, Asim Bhalerao, MS, Nidhi Jain, MS, Sanjay Kamble, PhD, Syed Dastager, PhD, L S Shashidhara, PhD, Rajesh Karyakarte, MD, Mahesh Dharne, PhD
Reduced protein-coding transcript diversity in severe dengue emphasises the role of alternative splicing
Priyanka Mehta1,2, Chinky Shiu Chen Liu1, Sristi Sinha1
, Ramakant Mohite1
, Smriti Arora1
, Partha Chattopadhyay1,2,
Sandeep Budhiraja3
, Bansidhar Tarai3
, Rajesh Pandey1,2
Antimicrobial resistance landscape in a metropolitan city context using open drain wastewater-based metagenomic analysis
Manas Kumar Madhukar , Nirupama Singh V Rajesh Iyer, Divya Tej Sowpati Karthik Bharadwaj Tallapaka , Rakesh Kumar Mishra, Shivranjani Chandrashekhar Moharir.
Metagenomic analysis reveals differential effects of sewage treatment on the microbiome and antibiotic resistome in Bengaluru, India
Annamalai Nataraj, Divya Mondhe, Vishwananth Srikantaiah, Farah Ishtiaq
Wastewater-based surveillance of vector-borne pathogens: a cautionary note
Farah Ishtiaq
Genomic sequencing should extend to diverse priority pathogens for effective study and surveillance of antimicrobial resistance: a systematic review of whole-genome sequencing studies from India
Nazneen Gheewalla, Jaisri Jagannadham, Rintu Kutum, Shraddha Karve
106_Brief Func Genomics_Bench to bedside translational research in COVID-19.pdf
Nityendra Shukla, Uzma Shamim, Preeti Agarwal, Rajesh Pandey and Jitendra Narayan
Genomic surveillance reveals early detection and transition of delta to omicron lineages of SARS-CoV-2 variants in wastewater treatment plants of Pune, India. Environ Sci Pollut Res (2023)
Rajput, V., Pramanik, R., Malik, V. et al
Defining a research agenda for environmental wastewater surveillance of pathogens
Alexander G. Shaw, Catherine Troman, Joyce Odeke Akello, Kathleen M. O’Reilly, Jillian Gauld, Stephanie Grow, Nicholas Grassly, Duncan Steele, David Blazes, Supriya Kumar & The Environmental Surveillance Working Group
A tale of two waves: Delineating diverse genomic and transmission landscapes driving the COVID-19 pandemic in Pune, India
Divya Niveditha, Soumen Khan, Ajinkya Khilari, Sanica Nadkarni, Unnati Bhalerao, Pradnya Kadam, Ritu Yadav, Jugal B. Kanekar, Nikita Shah, Bhagyashree Likhitkar, Rutuja Sawant, Shikha Thakur, Manisha Tupekar, Dhriti Nagarc, Anjani G. Rao, Rutuja Jagtap, Shraddha Jogi, Madhuri Belekar, Maitreyee Pathak, Priyanki Shah, Krishanpal Karmodiya
Ignoring wastewater is a wasted opportunity to improve disease response
Farah Ishtiaq
SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater – a longitudinal study in Bengaluru, India
Sanjay Lamba, Sutharsan Ganesan, Namrta Daroch, Kiran Paul, Soumya Gopal Joshi, Darshan Sreenivas, Annamalai Nataraj, Vishwanath Srikantaiah, Rakesh Mishra, Uma Ramakrishnan, Farah Ishtiaq
Genomic surveillance reveals circulation of multiple variants and lineages of SARS-CoV-2 during COVID-19 pandemic in Indian city of Bengaluru.
Darshan Sreenivas, Vinay Kumar, Kandasamy Kathirvel, Rakesh Netha Vadnala, Sachin Mishra, Bhagyashree Shelar, Srilatha Marate, Lakshminarayanan CP, Sai Disha K, Manisha Bhardwaj, Awadhesh Pandit, Satyajit Mayor, Uma Ramakrishnan, Dimple Notani.
Campus Sewage Water Surveillance based dynamics and infection trends of SARS-CoV-2 variants during third wave of COVID-19 in Pune, India
Vinita Malik, Vinay Rajput, Rinka Pramanik, Rachel Samson, Rakesh kumar Yadav, Pradnya Kadam, Nikita Shah, Rutuja Sawant, Unnati Bhalerao, Manisha Tupekar, Soumen Khan, Priyanki Shah, LS Shashidhara, Sanjay Kamble, Syed Dastager, Krishanpal Karmodiya, Mahesh Dharne
India must scale up wastewater analysis for health surveillance
